|
[1] Fangel J U, Sørensen K M, Jacobsen N, Mravec
J, Ahl L I, Bakshani C, Mikkelsen M D, Engelsen S B, Willats W, Ulvskov P. The
legacy of terrestrial plant evolution on cell wall fine structure [J]. Plant,
Cell & Environment, 2024, 47(4): 1238–1254.
[2] Zhang L, Gao C, Gao Y, Yang H, Jia M, Wang X,
Zhang B, Zhou Y. New insights into plant cell wall functionsb
[J]. Journal of Genetics and Genomics, 2025, 52(11): 1308–1324.
[3] Mellerowicz E J, Gorshkova T A. Tensional
stress generation in gelatinous fibres: a review and possible mechanism based
on cell-wall structure and composition [J]. Journal of Experimental Botany,
2012, 63(2): 551–565.
[4] Thomas M, Curry M J P B. An update on xylan
structure, biosynthesis, and potential commercial applications [J]. Cell Surface,
2023, 9(Suppl C): 100101.
[5] Cosgrove D J. Structure and growth of plant
cell walls [J]. Nature Reviews Molecular Cell Biology, 2024, 25(5): 340–358.
[6] 姚虎成, 肖旖旎, 任禹齐, 夏墨晗, 李梓悦, 孔德信. 天然产物糖基转移酶的分类、进化及底物预测研究进展[J]. 生命科学, 2023, 35(9): 1160–1168.
[7] He B, Bai
X, Tan Y, Xie W, Feng Y, Yang G. Glycosyltransferases: Mining,
engineering and applications in biosynthesis of glycosylated plant natural
products [J]. Synthetic and Systems Biotechnology, 2022, 7(1): 602–620.
[8] Busse-Wicher M, Grantham N J, Lyczakowski J J,
Nikolovski N, Dupree P. Xylan decoration patterns and the plant secondary cell
wall molecular architecture [J]. Biochemical Society Transactions, 2016, 44(1):
74–78.
[9] Chong J, Baltz R, Schmitt C, Beffa R, Fritig
B, Saindrenan P. Downregulation of a pathogen–responsive tobacco UDP-Glc: phenylpropanoid
glucosyltransferase reduces scopoletin glucoside accumulation, enhances
oxidative stress, and weakens virus resistance [J]. Plant Cell, 2002, 14(5):
1093–1107.
[10] Lelarge-Trouverie C, Cohen M, Trémulot L,
Breusegem F V, Mhamdi A, Noctor G . Metabolite
modification in oxidative stress responses: A case study of two defense hormones
[J]. Free Radical Biology & Medicine, 2023, 196(Suppl C): 145–155.
[11] Bais V S, Batra S, Prakash B. Identification
of two highly promiscuous thermostable sugar nucleotidylyltransferases for
glycorandomization [J]. FEBS Journal, 2018, 285(15): 2840–2855.
[12] Tohge T, Nishiyama Y, Hirai M Y, Yano M,
Nakajima J, Awazuhara M, Inoue E, Takahashi H, Goodenowe D B, Kitayama M, Noji
M, Yamazaki M, Saito K. Functional genomics by integrated analysis of
metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription
factor [J]. Plant Journal, 2005, 42(2): 218–235.
[13] Poppenberger B, Berthiller F, Lucyshyn D,
Sieberer T, Schuhmacher R, Krska R, Kuchler K, Ouml JG, Ssl, Luschnig C, Adam
G. Detoxification of the Fusarium mycotoxin deoxynivalenol
by a UDP-glucosyltransferase from Arabidopsis thaliana [J]. The Journal
of Biological Chemistry, 2003, 278(48): 47905–47914.
[14] Fujioka S, Sakurai A. Biosynthesis and
metabolism of brassinosteroids [J]. Physiologia Plantarum, 1997,
100(3): 710–715.
[15] Woodward A W, Bartel B. A receptor for auxin [J].
The Plant Cell, 2005, 17(9): 2425–2429.
[16] 吴蔼民, 赵先海, 解巧丽, 解新明. 葡萄糖醛酸木聚糖生物合成研究进展[J]. 华南农业大学学报, 2015(4): 1–10.
[17] Takenaka Y, Kato K, Ogawa-Ohnishi M, Tsuruhama
K, Kajiura H, Yagyu K, Takeda A, Takeda Y, Kunieda T, Hara–Nishimura I, Kuroha
T, Nishitani K, Matsubayashi Y, Ishimizu T. Pectin RG-I rhamnosyltransferases
represent a novel plant–specific glycosyltransferase family [J]. Nature Plants,
2018, 4(9): 669–676.
[18] Voiniciuc C, Dama M, Gawenda N, Stritt F,
Pauly M. Mechanistic insights from plant heteromannan synthesis in yeast [J].
Proceedings of the National Academy of Sciences of the United States of America,
2019, 116(2): 522–527.
[19] Zhong R, Phillips D R, Adams E R, Ye Z. An
Arabidopsis family GT106 glycosyltransferase is essential for xylan
biosynthesis and secondary wall deposition [J]. Planta, 2023, 257(2): 43.
[20] Wachananawat B, Kuroha T, Takenaka Y, Kajiura
H, Ishimizu T. Diversity of
Pectin Rhamnogalacturonan I Rhamnosyltransferases in Glycosyltransferase
Family 106 [J]. Frontiers in Plant Science, 2020, 11: 997.
[21] Tobias P A, Christie N, Naidoo S, Guest DI,
Uuml K, Lheim C. Identification of the Eucalyptus grandis chitinase gene family
and expression characterization under different biotic stress challenges [J].
Tree Physiology, 2017, 37(5): 565–582.
[22] Kaminski K, Ludwiczak J, Alva V, Dunin-Horkawicz
S. pLM-BLAST–distant homology detection based on direct comparison of
sequence representations from protein language models [J]. Bioinformatics,
2023, 39(10): btad579.
[23] Peek A L, Rebbeck T J, Leaver A M, Foster S L,
Refshauge K M, Puts N A, Oeltzschner G, Andronesi O C, Barker P B, Bogner W. A
comprehensive guide to mega-press for GABA measurement [J].
Analytical Biochemistry, 2023, 669(Suppl C): 115113.
[24] Wascher M, Kubatko L. Consistency of
SVDQuartets and maximum likelihood for coalescent-based species tree estimation
[J]. Systematic Biology, 2021,70(1): 33–48.
[25] Zhou T, Xu K, Zhao F, Liu W, Li L,Hua Z, Zhou
X. itol.toolkit accelerates working with iTOL (Interactive Tree of Life) by an
automated generation of annotation files [J]. Bioinformatics, 2023,
39(6): btad339.
[26] Bailey T L, Johnson J, Grant C, Charles E,
Noble W S. The MEME Suite [J]. Nucleic Acids Research, 2015,
43(W1): W39–W49.
[27] Wang J, Chitaz F, Derbyshire M K, Gonzales N
R, Gwadz M, Lu S, Marchler G H, Song J S, Thanki N, Yamashita R A, Yang M,
Zhang D, Zheng C, Lanczycki C J, Marchler-Bauer A. The conserved domain database in 2023 [J].
Nucleic Acids Research, 2023, 51(D1): D384–D388.
[28] Chen C, Wu Y, Li J, Wang X, Zeng Z, Xu J, Liu
Y, Feng J, Chen H, He Y, Xia R. TBtools-II: A "One for All, All for
One" bioinformatics platform for biological big-data mining [J]. Molecular
Plant. 2023, 16(11): 1733–1742.
[29] Li Y, Lu Y. BLASTP–ACC: Parallel architecture and hardware accelerator
design for Blast–based protein sequence alignmentv[J]. IEEE
Transactions on Biomedical Circuits and Systems, 2019, 13(6): 1771–1782.
[30] Wang Y P, Tang H B, Debarry J D, Tan X, Li J P.,
Wang X Y, Lee T H, Jin H Z, Marler B, Guo H, Kissinger J C, Paterson A H. MCScanX:
a toolkit for detection and evolutionary analysis of gene synteny and
collinearity [J]. Nucleic Acids Research. 2012, 40(7): e49.
[31] Wang Y, Jia L, Tian G, Dong Y, Zhang X, Zhou Z,
Luo X, Li Y, Yao W. shinyCircos–V2.0: Leveraging the creation of Circos plot
with enhanced usability and advanced features [J]. iMeta, 2023, 2(2): e109.
[32] Silva M A, Júnior J C D N, Thomaz D V, Maia R T,
Amador V C, Tommaso G, Coelho G D. Comparative homology of Pleurotus ostreatus laccase enzyme: Swiss model or Modeller? [J].
Journal of Biomolecular Structure and Dynamics, 2023, 41(18): 8927–8940.
[33] Lescot M, Dehais P, Thijs G. PlantCARE, a
database of plant cis-acting regulatory elements and a portal to tools for in
silico analysis of promoter sequences [J]. Nucleic Acids Research, 2001, 30(1):
325–327.
[34] Tan Y X,
Martin T G, Harrison B C, Leinwand L A. Utility of the burmese
Python as a model for studying plasticity of extreme physiological systems [J]. Journal of Muscle Research and Cell Motility, 2023, 44(2): 95–106. |
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