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Optimization and Preliminary Application of ISSR-PCR Amplification for Cycas segmentifida
MA Yong, LI Nan, ZHONG Ye-cong, LU Zhao-fu, LIN Jian-zhao, JIANG Ming, LIN Ping-yi, LUO Bin
2005, 34(01):
10-13.
Cycas segmentifida genomic DNA, extracted from its leaves by CTAB method, was used as ISSR-PCR amplification template. By adjusting the influencing factors of ISSR, such as template DNA concentration, dNTP concentration, Taq polymerase content, primer concentration, Mg2+ concentration and annealing temperature, the PCR amplication conditions were optimized. The optimal experiment conditions were as follows:PCR reaction volume of 20μl contained 2μl 10×PCR buffer, 20ng template DNA, 1U Taq polymerase, 1.5~2.75mmol/L MgCl2, 0.1mmol/L 4×dNTP, 0.22μmol/L primer and 2% formamide; proper annealing temperature was 50~52℃. 12 primers, which could produce more reproducible and polymorphic bands, were used to amplify all of the samples,and 122 DNA bands were generated, of which 86(70.49%) were polymorphic. POPGENE analysis indicated that moderate or slightly high levels of genetic diversity existed at species level, and the value of gene diversity coefficient(Gst) among populations was very high.
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